Ever found yourself torn between a comforting slice of pizza and your goals to eat healthier? I certainly have! That’s why I was thrilled to create these Low-Carb Spaghetti Squash Pizza Nests—little bites of joy that satisfy your pizza cravings without the guilt. Crispy on the edges and filled with delicious cheese and pepperoni, they’re not only a fun twist on traditional pizza but also perfect for anyone on a keto or gluten-free diet. With quick prep and easy clean-up, these nests make for an ideal weeknight dinner. Who would have thought you could transform spaghetti squash into little pizza vessels? Let’s dive into how you can create these delightful nests that are sure to impress your family and friends!

Why will you love these pizza nests?
Low-Carb Delight: These Spaghetti Squash Pizza Nests are a guilt-free indulgence that allows you to enjoy the flavors of pizza without the carbs. Easy Preparation: With minimal ingredients and straightforward instructions, you’ll have a delicious meal ready in no time! Crispy Yet Cheesy: Enjoy the perfect contrast of crispy edges and a gooey interior loaded with cheese and pepperoni. Versatile Base: Feel free to substitute zucchini noodles or even cauliflower rice for different flavors! Crowd-Pleaser: Family and friends will love these cute little nests, making them perfect for gatherings or a fun family dinner! If you’re seeking more healthy yet tasty ideas, check out my Italian Spaghetti Ground or delicious Cheesy Honey Pizza recipes!
Spaghetti Squash Pizza Nests Ingredients
• Here’s everything you need to whip up these delightful bites!
For the Nests
- Spaghetti Squash – The base of the nests adds a unique texture and a wholesome feel.
- Egg – Acts as a binder, providing necessary protein to hold it all together.
- Garlic Powder – Elevates flavor; you can swap with fresh minced garlic for a more robust taste.
- Italian Seasonings – Brings classic pizza vibes; feel free to add your favorite herbs for personal flair.
- Oregano – Adds earthy touch; while optional, it enhances the overall flavor profile.
- Sea Salt – A crucial enhancer for taste; adjust to your preference.
For the Filling
- Tomato Sauce – Provides moisture and rich flavor; pick a low-sugar variety for a health boost.
- Pepperoni – The star topping, offering savory goodness; turkey pepperoni is a healthier alternative, or you can skip it for a vegetarian option.
- Mozzarella Cheese – Infuses the nests with creaminess and classic pizza flavors; use vegan cheese if desired.
- Basil – Freshens up the dish and adds a splash of color; dried basil works well too!
These Spaghetti Squash Pizza Nests are not just a meal; they’re a fun way to enjoy pizza flavors in a healthier format!
Step‑by‑Step Instructions for Spaghetti Squash Pizza Nests
Step 1: Preheat and Prepare
Begin by preheating your oven to 400°F (204°C). While the oven warms, prepare a baking sheet by greasing it lightly with oil or lining it with parchment paper. This ensures easy removal of your Spaghetti Squash Pizza Nests later on. Having everything ready will make your cooking experience smooth and enjoyable!
Step 2: Bake the Spaghetti Squash
Carefully poke several holes in the spaghetti squash using a fork to allow steam to escape during baking. Place it on the prepared baking sheet and bake for 1 hour, turning it halfway through to ensure even cooking. The squash is ready when the skin is tender to the touch; this sets the stage for your nests.
Step 3: Cool and Prepare the Squash
Once baked, remove the spaghetti squash from the oven and let it cool for a few minutes. When it’s safe to handle, slice it in half lengthwise. Using a fork, scrape out the strands into a large bowl, creating the “noodles” for your pizza nests. The fluffy, golden strands are the perfect base for this delicious recipe!
Step 4: Mix the Flavor Base
In a separate bowl, combine the tomato sauce, garlic powder, Italian seasoning, oregano, and a pinch of sea salt. Stir until the mixture is well blended and vibrant. This sauce will not only impart rich flavors into the nests but will also bring the essence of classic pizza to your Spaghetti Squash Pizza Nests.
Step 5: Combine the Ingredients
Add the beaten egg to the bowl with the squash noodles and mix until everything is well combined. This binding agent is essential for forming the structure of your nests. You’ll want the egg to cling to the noodles evenly for consistency and to help them hold their shape while baking.
Step 6: Form the Nests
Spoon the squash mixture into greased muffin tins, pressing down slightly to create little nests. Ensure that you create well-defined wells in the center of each nest for the fillings. This step is vital for holding your toppings and will give your Spaghetti Squash Pizza Nests that delicious bite!
Step 7: Add the Toppings
Fill each well in your nests with a generous spoonful of the tomato sauce mixture. Top off each nest with a slice of pepperoni (or your preferred toppings) and a sprinkle of mozzarella cheese. For a fresh touch, you can also add some chopped basil on top, making each nest not only tasty but visually appealing as well.
Step 8: Bake Until Perfect
Place the muffin tin in the oven and bake for an additional 25 minutes. The nests are ready when the cheese is melted, and the edges turn golden brown. You’ll be greeted by a lovely aroma, and your mouth will water in anticipation of these delightful Spaghetti Squash Pizza Nests!

Expert Tips for Spaghetti Squash Pizza Nests
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Puncture Holes: Make sure to poke enough holes in the spaghetti squash before baking. This allows steam to escape, preventing it from bursting in the oven.
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Microwave Shortcut: If you’re short on time, microwave the spaghetti squash for 3-5 minutes before baking. This softens it and makes cutting easier!
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Cool Before Release: Let the nests cool slightly in the muffin tin before removing. This prevents them from breaking and helps maintain their shape.
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Customize Toppings: Feel free to mix it up! Try using turkey pepperoni, various veggies, or even different cheeses to personalize your Spaghetti Squash Pizza Nests.
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Adjust Seasonings: Taste your sauce mixture before filling the nests. If you love a stronger flavor, don’t hesitate to add more herbs or salt to suit your preference.
Make Ahead Options
These Spaghetti Squash Pizza Nests are perfect for meal prep enthusiasts! You can prepare the squash and form the nests up to 24 hours in advance. Simply bake the spaghetti squash as directed, let it cool, scrape out the noodles, and combine them with the other nest ingredients (egg, garlic powder, and spices). Spoon this mixture into muffin tins, cover, and refrigerate until ready to bake. When you’re ready to serve, add your tomato sauce and toppings, then bake for 25 minutes until the cheese is bubbly and the edges are golden. This way, you can enjoy delicious, homemade pizza nests on busy weeknights with minimal effort!
How to Store and Freeze Spaghetti Squash Pizza Nests
Fridge: Store your Spaghetti Squash Pizza Nests in an airtight container for up to 7 days. Reheat in the oven for the best results, ensuring they stay crispy.
Freezer: For longer storage, freeze the nests in a single layer on a baking sheet before transferring them to a freezer-safe container. They’ll keep well for up to 3 months.
Reheating: To reheat frozen nests, thaw in the fridge overnight, then bake at 350°F (175°C) until heated through, about 15-20 minutes.
Avoid sogginess: If you’re storing leftovers, consider keeping the sauce and cheese separate until you’re ready to reheat to prevent sogginess.
Spaghetti Squash Pizza Nests Variations
Ready to personalize your Spaghetti Squash Pizza Nests? Let your culinary creativity shine and enhance flavors, textures, and dietary needs!
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Zucchini Noodles: Swap spaghetti squash with zucchini noodles for a lighter twist. Just spiralize and sauté briefly for a quick prep!
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Cauliflower Rice: Instead of spaghetti squash, try cauliflower rice for a grain-free base. It adds a lovely subtle taste and a low-carb touch!
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Extra Veggies: Add any cooked vegetables, like bell peppers or mushrooms, into your nests for a flavor boost. It turns this dish into a veggie-packed delight.
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Meat Variations: Replace pepperoni with cooked ground turkey or beef for a different protein option. These swaps bring a heartier feel to each bite!
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Spice It Up: Want more heat? Sprinkle in crushed red pepper flakes or jalapeños for a zesty kick. It’s a simple way to elevate your nests!
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Cheese Choices: Try using cheddar or feta cheese instead of mozzarella for a unique flavor profile. Each offers a fun twist to the classic taste!
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Fresh Herbs: Experiment with fresh herbs like thyme or oregano in addition to basil. They add depth and color that elevate your nests beautifully.
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Egg Alternatives: For a vegan option, use flax eggs or a chia seed mixture to bind the noodles. Your nests will remain delightful and appealing—minus the eggs!
These simple variations can take your Spaghetti Squash Pizza Nests to delightful new heights. For additional pizza-inspired recipes, explore my tasty Pepperoni Pizza Quesadilla or satisfy your cheese cravings with Cheesy Honey Pizza!
What to Serve with Spaghetti Squash Pizza Nests
Creating a satisfying dinner experience can elevate your Spaghetti Squash Pizza Nests into a full, flavorful meal that your family will love!
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Fresh Side Salad: Crisp greens with a tangy vinaigrette balance the cheesy textures of the nests, enhancing your meal.
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Garlic Breadsticks: The indulgent taste of garlic bread complements the nests beautifully, adding that comforting touch of traditional pizza night.
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Roasted Vegetables: A medley of seasonal veggies brings earthy flavors and vibrant colors to your plate, making for a delightful contrast.
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Zucchini Noodles: For a fun twist, pair your nests with zucchini noodles dressed lightly in olive oil and herbs, echoing the Italian theme.
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Classic Caesar Salad: Creamy dressing and crunchy croutons tie the meal together, providing a hearty yet refreshing addition alongside your nests.
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Wine Pairing: A crisp white wine or light red complements the savory flavors, creating a lovely balance that enchants your taste buds.
Each of these pairings not only enhances your Spaghetti Squash Pizza Nests but also brings a touch of warmth and satisfaction to your dining table. Enjoy crafting a meal that’s both wholesome and delightful!

Spaghetti Squash Pizza Nests Recipe FAQs
How do I select a ripe spaghetti squash?
Absolutely! When choosing a spaghetti squash, look for a firm, symmetrical squash with a vibrant yellow color. Avoid any squash with soft spots or discoloration, which may indicate overripeness. An ideal spaghetti squash should feel heavy for its size and have a dull skin rather than a shiny finish.
What is the best way to store leftover spaghetti squash pizza nests?
Very! Store your Spaghetti Squash Pizza Nests in an airtight container in the refrigerator for up to 7 days. Reheat them in the oven at 350°F (175°C) for about 10 minutes to retain their delicious crispy texture. Just remember to keep any extra sauce or toppings separate to prevent sogginess!
Can I freeze my spaghetti squash pizza nests?
Absolutely! To freeze your nests, place them in a single layer on a baking sheet and let them freeze for a few hours until firm. Then, transfer them to a freezer-safe container or bag. They can last for up to 3 months in the freezer. For reheating, thaw in the fridge overnight, and then bake at 350°F (175°C) for 15-20 minutes until heated through.
What should I do if my spaghetti squash nests fall apart?
Very! If your nests crumble, ensure that you’ve mixed the beaten egg well with the squash before forming them. Additionally, avoid overfilling the nests with toppings, as this might prevent them from holding their shape. Cooling them slightly in the muffin tin before removal also helps maintain their structure.
Are spaghetti squash pizza nests safe for pets?
That’s a good question! While spaghetti squash itself is safe for dogs in small amounts, keep in mind that other ingredients like cheese and tomato sauce may not be suitable for pets. It’s always best to consult with your veterinarian before sharing any human food with your furry friends.
Can I substitute the pizza toppings?
Absolutely! Feel free to customize your toppings based on your taste preference. You can use cooked ground turkey, a variety of vegetables like bell peppers or mushrooms, or even omit the meat for a vegetarian option. Personalizing your Spaghetti Squash Pizza Nests can make them even more delightful!

Delicious Spaghetti Squash Pizza Nests for Guilt-Free Indulgence
Ingredients
Equipment
Method
- Preheat your oven to 400°F (204°C) and prepare a greased baking sheet.
- Poke holes in the spaghetti squash, place it on the baking sheet, and bake for 1 hour, turning halfway.
- Let the spaghetti squash cool for a few minutes, then slice in half and scrape out the strands into a bowl.
- In another bowl, mix the tomato sauce, garlic powder, Italian seasoning, oregano, and sea salt.
- Combine the egg with the squash noodles until well mixed.
- Spoon the mixture into greased muffin tins, creating wells for toppings.
- Fill wells with the tomato sauce mixture, add pepperoni and cheese on top.
- Bake for an additional 25 minutes until cheese is melted and edges are golden.

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